| Secrets from OWCA: The Organization Without a Cool Acronym | 2010 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 17 |
| Jailhouse Doof | 2010 | Scott Peterson, John Green | ink | Story | 8 | Disney Publishing Worldwide (global) | 17 |
| Dr. Heinz Doofenshmirtz's Tales of Druselstein | 2011 | Scott Peterson, Eric Jones | ink | Story | 1 | Disney Publishing Worldwide (global) | 16 |
| Dr. Heinz Doofenshmirtz's Tales of Druselstein | 2011 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 15 |
| It's Alive! | 2011 | Scott Peterson, Eric Jones | ink | Story | 5 | Disney Publishing Worldwide (global) | 15 |
| Dino-Might! | 2010 | Jim Bernstein, John Green | ink | Story | 5 | Disney Publishing Worldwide (global) | 14 |
| Ferb's Words of Wisdom | 2010 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 12 |
| Happy Birthday, Perry! | 2011 | Scott Peterson, John Green | ink | Story | 8 | Disney Publishing Worldwide (global) | 12 |
| Down at the Slushee Dawg | 2011 | Scott Peterson, Eric Jones | ink | Story | 2 | Disney Publishing Worldwide (global) | 12 |
| Secrets from OWCA: The Organization Without a Cool Acronym | 2011 | Scott Peterson, Eric Jones | ink | Story | 1 | Disney Publishing Worldwide (global) | 12 |
| Last Episode | 2011 | Scott Peterson, Eric Jones | ink | Story | 8 | Disney Publishing Worldwide (global) | 12 |
| Phineas and Ferb Save America | 2011 | Scott Peterson, John Green | ink | Story | 8 | Disney Publishing Worldwide (global) | 11 |
| The Comic Hijinks of Norm & Doof | 2011 | Scott Peterson, Eric Jones | ink | Story | 2 | Disney Publishing Worldwide (global) | 11 |
| Clean Sweep | 2011 | Scott Peterson, Eric Jones | ink | Story | 5 | Disney Publishing Worldwide (global) | 11 |
| Mummy Matters! | 2004 | Eric Jones, Dan Gracey | ink | Story | 4 | Disney Comics | 10 |
| Part One - Ariel's Story | 1997 | Bob Budiansky, Carlos Mota | ink | Story | 30 | USA (miscellaneous) | 10 |
| Ron the Unstoppable! | 2004 | Eric Jones, Dan Gracey | ink | Story | 2 | Disney Comics | 8 |
| Secrets from OWCA: The Organization Without a Cool Acronym | 2011 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 8 |
| Masquerade | 2011 | Scott Peterson, Eric Jones | ink | Story | 8 | Disney Publishing Worldwide (global) | 8 |
| Break Takes | 2005 | Bill Matheny, Phil Allora | ink | Story | 2 | Disney Comics | 7 |
| Carpet Burns | 1997 | Kayte Kuch, Rusty Haller | ink | Story | 8 | USA (miscellaneous) | 7 |
| Impossible Voyage! | 2004 | Eric Jones, Dan Gracey | ink | Story | 4 | Disney Comics | 6 |
| I, Onion! | 2006 | Elizabeth Watasin, Dan Gracey | ink | Story | 3 | Disney Comics | 6 |
| Nervous Rex | 1997 | Jack Enyart, Jackson Guice | ink | Story | 8 | USA (miscellaneous) | 6 |
| Book 'em, Rufus! | 2007 | Steve Behling, Craig Rousseau | ink | Story | 2 | Disney Comics | 5 |
| Rocket Chips! | 2005 | John Green, Phil Allora | ink | Story | 2 | Disney Comics | 5 |
| Naco Nightmare! | 2005 | John Green, Phil Allora | ink | Story | 1 | Disney Comics | 5 |
| Dead Calm | 2012 | Scott Peterson, John Green | ink | Story | 8 | Disney Publishing Worldwide (global) | 5 |
| Phineas and Ferb's Amazon Adventure | 2012 | Scott Peterson, Scott Neely | ink | Story | 8 | Disney Publishing Worldwide (global) | 5 |
| Kitchen Kaos! | 2005 | Phil Allora | ink | Story | 5 | Disney Comics | 4 |
| Double Danger! | 2006 | John Green, Phil Allora | ink | Story | 2 | Disney Comics | 4 |
| Home Makeover | 2012 | Scott Peterson, Scott Neely | ink | Story | 8 | Disney Publishing Worldwide (global) | 4 |
| Night of the Goozim | 2012 | Scott Peterson, Scott Neely | ink | Story | 5 | Disney Publishing Worldwide (global) | 4 |
| Dr. Heinz Doofenshmirtz' Tales of Druselstein | 2013 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 4 |
| As the Worm Turns | 2012 | Scott Peterson, Scott Neely | ink | Story | 4 | Disney Publishing Worldwide (global) | 4 |
| Agent in Training | 2012 | Scott Peterson, Magic Eye Studio | ink | Story | 4 | Disney Publishing Worldwide (global) | 4 |
| The Substitute | 2012 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 4 |
| A Friend in Need | 1997 | Clay Griffith, Jackson Guice | ink | Story | 8 | USA (miscellaneous) | 4 |
| The Best Gift | 1997 | Rurik Tyler, Don Perlin | ink | Story | 6 | USA (miscellaneous) | 4 |
| Joust for Kicks! | 2004 | Eric Jones, Carlos Ramos | ink | Story | 4 | Disney Comics | 3 |
| The Mole Rat Factor! | 2007 | John Green, Phil Allora | ink | Story | 4 | Disney Comics | 3 |
| Double Agent Danger | 2013 | Scott Peterson, Scott Neely | ink | Story | 5 | Disney Publishing Worldwide (global) | 3 |
| Stop Digging | 2013 | Scott Peterson, Scott Neely | ink | Story | 5 | Disney Publishing Worldwide (global) | 3 |
| Attack of the Killer Pizza | 2013 | Scott Peterson, Magic Eye Studio | ink | Story | 5 | Disney Publishing Worldwide (global) | 3 |
| Guitar Band | 2013 | Scott Peterson, Scott Neely | ink | Story | 1 | Disney Publishing Worldwide (global) | 3 |
| Behind the Scenes with Carl and Monogram | 2014 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 3 |
| Ice Cream Cake | 2014 | Scott Peterson, Scott Neely | ink | Story | 1 | Disney Publishing Worldwide (global) | 3 |
| Monkey See Monkey Doof | 2012 | Scott Peterson, Magic Eye Studio | ink | Story | 4 | Disney Publishing Worldwide (global) | 3 |
| Sick Bed | 2012 | Scott Peterson, Magic Eye Studio | ink | Story | 4 | Disney Publishing Worldwide (global) | 3 |
| Multiple Choice | 2013 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 3 |
| The Shadows Know | 1997 | Kayte Kuch, Howard Simpson | ink | Story | 12 | USA (miscellaneous) | 3 |
| Scentimental Journey | 1997 | Kayte Kuch, Todd Smith | ink | Story | 12 | USA (miscellaneous) | 3 |
| Untitled cover | 2009 | Mike DeCarlo | pencils, ink | Cover | 1 | X | 3 |
| Untitled cover | 2009 | Mike DeCarlo | pencils, ink | Cover | 1 | X | 3 |
| Going Overboard! | 2005 | Michael Stewart, Dustin Evans | ink | Story | 4 | Disney Comics | 2 |
| The Best There Is! | 2007 | Jesse Post, Phil Allora | ink | Story | 3 | Disney Comics | 2 |
| Isabella's Diary | 2013 | Scott Peterson, Scott Neely | ink | Story | 1 | Disney Publishing Worldwide (global) | 2 |
| Elect Doof | 2013 | Scott Peterson, Scott Neely | ink | Story | 1 | Disney Publishing Worldwide (global) | 2 |
| Behind the Scenes with Carl and Monogram | 2013 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 2 |
| Obscure Patches of the Fireside Girls | 2013 | Scott Peterson, John Green | ink | Story | 1 | Disney Publishing Worldwide (global) | 2 |